msparse

parse output from Hudson's ms

This python script will read output from Hudson's ms program and parse it. The resulting output file will have all segregating sites in a sample concatenated. For example, ms 4 3 -s 1 will generate 3 samples of 4 chromosomes each with one segregating site each. This script will put together all three segregating sites together so it can be used for further downstream analysis e.g. R.

download msparse.py